LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-423-3p


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Gene
miRNA
Score
DIANA Links
PCCA-AS1
hsa-miR-423-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000451662
Biotype: antisense
Gene id: ENSG00000234650
Gene Name: PCCA-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-34
0.097
0
LINC01189
hsa-miR-423-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
301-318
0.079
1
PCCA-AS1
hsa-miR-423-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_047686.1
Biotype: antisense
Gene id: NR_047686.1 (gene)
Gene Name: PCCA-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-37
0.073
0
LINC00960
hsa-miR-423-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_040005.1
Biotype: lincRNA
Gene id: NR_040005.1 (gene)
Gene Name: LINC00960
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
905-930
0.031
0
7mer
434-461
0.011
1
7mer
428-454
0.005
0
6mer
18-42
0.004
0
LINC00960
hsa-miR-423-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463183
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
956-981
0.030
0
7mer
324-351
0.014
1
7mer
318-344
0.006
0
RP11-111F5.8
hsa-miR-423-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428709
Biotype: lincRNA
Gene id: ENSG00000233651
Gene Name: RP11-111F5.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3008-3025
0.047
0
CTD-3224K15.2
hsa-miR-423-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514287
Biotype: lincRNA
Gene id: ENSG00000250635
Gene Name: CTD-3224K15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-186
0.046
7
XLOC_010718
hsa-miR-423-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022107
Biotype: transcript isomorph
Gene id: XLOC_010718
Gene Name: XLOC_010718
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-243
0.042
1
RP3-348I23.2
hsa-miR-423-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000421167
Biotype: antisense
Gene id: ENSG00000233848
Gene Name: RP3-348I23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-29
0.042
0
FAM224A
hsa-miR-423-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000419557
Biotype: lincRNA
Gene id: ENSG00000233522
Gene Name: FAM224A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-85
0.041
0
RP5-1073O3.2
hsa-miR-423-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429398
Biotype: antisense
Gene id: ENSG00000231128
Gene Name: RP5-1073O3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-84
0.041
4
FAM224B
hsa-miR-423-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000458667
Biotype: lincRNA
Gene id: ENSG00000230663
Gene Name: FAM224B
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1948-1972
0.040
0
XLOC_001391
hsa-miR-423-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004715
Biotype: transcript isomorph
Gene id: XLOC_001391
Gene Name: XLOC_001391
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
159-178
0.037
2
HOXA11-AS
hsa-miR-423-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000522863
Biotype: antisense
Gene id: ENSG00000240990
Gene Name: HOXA11-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
489-510
0.019
8
7mer
120-146
0.010
7
7mer
1153-1174
0.007
1
XLOC_001668
hsa-miR-423-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2113-2131
0.032
1
8mer
2126-2144
0.004
0
RP11-352D13.6
hsa-miR-423-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565312
Biotype: antisense
Gene id: ENSG00000261634
Gene Name: RP11-352D13.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
697-718
0.032
0
6mer
1642-1658
0.004
Not Conserved
LINC01393
hsa-miR-423-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000460471
Biotype: lincRNA
Gene id: ENSG00000225535
Gene Name: LINC01393
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
651-673
0.021
1
7mer
455-476
0.015
0
XLOC_004363
hsa-miR-423-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009935
Biotype: transcript isomorph
Gene id: XLOC_004363
Gene Name: XLOC_004363
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-259
0.034
1
C14orf64
hsa-miR-423-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000499006
Biotype: lincRNA
Gene id: ENSG00000246223
Gene Name: C14orf64
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1126-1145
0.024
1
8mer
1431-1452
0.007
0
CTD-2336O2.1
hsa-miR-423-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518481
Biotype: antisense
Gene id: ENSG00000253982
Gene Name: CTD-2336O2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-383
0.030
1
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